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Yang, Yuechen; Wang, Yu; Yao, Tianyuan; Deng, Ruining; Yin, Mengmeng; Zhao, Shilin; Yang, Haichun; Huo, Yuankai. “PySpatial: A High-Speed Whole Slide Image Pathomics Toolkit.” IS and T International Symposium on Electronic Imaging Science and Technology 37, no. 12 (2025): HPCI-177. https://doi.org/10.2352/EI.2025.37.12.HPCI-177. Read More

Deng, R.; Liu, Q.; Cui, C.; Yao, T.; Xiong, J.; Bao, S.; Li, H.; Yin, M.; Wang, Y.; Zhao, S.; Tang, Y.; Yang, H.; Huo, Y. “HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis.” Lecture Notes in Computer Science (including subseries Lecture Notes in… Read More

Kaur, H.; Heiser, C.N.; McKinley, E.T.; Ventura-Antunes, L.; Harris, C.R.; Roland, J.T.; Farrow, M.A.; Selden, H.J.; Pingry, E.L.; Moore, J.F.; Ehrlich, L.I.R.; Shrubsole, M.J.; Spraggins, J.M.; Coffey, R.J.; Lau, K.S.; Vandekar, S.N. “Consensus tissue domain detection in spatial omics data using multiplex image labeling with regional morphology… Read More

Li, Jia, Simmons, Alan J., Hawkins, Caroline V., Chiron, Sophie, Ramirez-Solano, Marisol A., Tasneem, Naila, Kaur, Harsimran, Xu, Yanwen, Revetta, Frank, Vega, Paige N., Bao, Shunxing, Cui, Can, Tyree, Regina N., Raber, Larry W., Conner, Anna N., Pilat, Jennifer M., Jacobse, Justin, McNamara, Kara M., Allaman, Margaret M., Raffa, Gabriella… Read More

Bao, Shunxing, Guo, Junlin, Lee, Ho Hin, Deng, Ruining, Cui, Can, Remedios, Lucas W., Liu, Quan, Yang, Qi, Xu, Kaiwen, Yu, Xin, Li, Jia, & Li, Yike. (2024). Mitigating over-saturated fluorescence images through a semi-supervised generative adversarial network. In Proceedings of the 21st IEEE International Symposium on Biomedical Imaging (ISBI… Read More

Juming Xiong, Yilin Liu, Ruining Deng, Regina N. Tyree, Hernan Correa, Girish Hiremath, Yaohong Wang, and Yuankai Huo. “Deep Learning-based Open Source Toolkit for Eosinophil Detection in Pediatric Eosinophilic Esophagitis.” Proceedings of SPIE Medical Imaging 2024: Digital and Computational Pathology, vol. 12933, 129330X, 2024, San Diego, California Eosinophilic Esophagitis… Read More

Xueyuan Li, Ruining Deng, Yucheng Tang, Shunxing Bao, Haichun Yang, and Yuankai Huo. “Leverage Weekly Annotation to Pixel-wise Annotation via Zero-shot Segment Anything Model for Molecular-empowered Learning.” Proceedings of SPIE Medical Imaging 2024: Digital and Computational Pathology, vol. 12933, 129330K, 2024, San Diego, California Precise identification of multiple cell… Read More

Shunxing Bao, Sichen Zhu, Vasantha L. Kolachala, Lucas W. Remedios, Yeonjoo Hwang, Yutong Sun, Ruining Deng, Can Cui, Rendong Zhang, Yike Li, Jia Li, Joseph T. Roland, Qi Liu, Ken S. Lau, Subra Kugathasan, Peng Qiu, Keith T. Wilson, Lori A. Coburn, Bennett A. Landman, and Yuankai Huo. “Cell… Read More

Haoju Leng, Ruining Deng, Shunxing Bao, Dazheng Fang, Bryan A. Millis, Yucheng Tang, Haichun Yang, Xiao Wang, Yifan Peng, Lipeng Wan, and Yuankai Huo. “High-performance Data Management for Whole Slide Image Analysis in Digital Pathology.” Proceedings of SPIE Medical Imaging 2024: Digital and Computational Pathology, vol. 12933, 129330Y, 2024,… Read More

Lucas W. Remedios, Shunxing Bao, Samuel W. Remedios, Ho Hin Lee, Leon Cai, Thomas Li, Ruining Deng, Can Cui, Jia Li, Qi Liu, Ken S. Lau, Joseph T. Roland, Mary K. Washington, Lori A. Coburn, Keith T. Wilson, Yuankai Huo, and Bennett A. Landman. “Nucleus Subtype Classification Using Inter-modality… Read More